Page History
...
Note: Macros must be enabled for this form to work properly. To allow the macros in this form to run, please change your macro security level to medium (recommended) or low. From the Tools menu, choose Macro, then Security. After you change the security level to medium or low, you will have to restart Excel.
Download: external_link_data_form.xls (CHANGE URL)
Option 2) Send tab-delimited data from any program. If you want to create your own file please follow the following format in submitting your data and include the column headers as the first line in your files.
...
- Log in with your ORCiD
- Click on the Submission link in the upper left menubar to start a new submission or continue one in progress
- Enter in the DOI or Pubmed ID for the paper you are curating
- Enter in ID's for every locus you are curating from the paper. GOAT accepts UniProt IDs, AGI Locus IDs and RNA central IDs
- Add your annotations. Choose the type of annotation from the drop down menu. You can choose to make Gene Ontology annotations (cellular component, molecular function, biological process), Plant Ontology annotations (plant developmental stages or anatomy), protein interactions or comments
- Review your annotations before you submit
- After you complete your submission, TAIR curators will review the information. If we have any questions, we will get in touch with you
We also provide a preformatted Excel spreadsheet. Please click on the link to download the spreadsheet. Required fields are blue . Fields with an asterisk(*) can have more than one entry separated by a pipe with no intervening spaces (e.g. Ecker,Joseph|Bell,Callum). If submitting a manuscript to The Plant Journal, please include this file in your TPJ submission as a supplemental file.
...
| Field | Description | Values/Constraints | Examples |
|---|---|---|---|
| Contact Person/ Submitter * | Name of the person we can contact if we have questions about the annotation | none | Eva Huala |
| Locus Identifier | AGI locus id or name of genetic locus | At#g#####, see AGI coding convention if the gene is new, splitting or merging existing genes | AAAP or At1g10010 |
| Gene Name | symbol-based name of gene, if this exists | See nomenclature guidelines | ETO1 |
| Reference * | PubMedID or citation | PubMed ID can be obtained from TAIR Publication Search or PubMed | PubMedID:14576282; Smith (2006) Science 123:23; DOI:10.1111/j.1365-313x. 2010.04399.x; submitted to Plant Journal |
| Gene function, process, location or interacting partner | functional annotation that you'd like to make | For interacting partners, please use the AGI code (At1g01010.1) in addition to the gene name | ser/thr kinase, outer mitochondrial membrane, anther, gynoecium morphogenesis, At1g01010.1(ABC1) |
| Method description | Method and evidence used to support the functional annotation | A list of method descriptions is given as the second sheet of the Excel workbook | enzyme assay, mutant phenotype, transcript levels, yeast two-hybrid-assay |
...
Please contact TAIR to request a new locus identifier (i.e. AGI Locus code). Once you have the new identifier please contact TAIR to provide any information you have about the function or expression pattern of the new gene. If you are registered at TAIR, you can submit functional annotation information directly or register a new gene symbol. Registration is free.
I think the structure of a gene in the current annotation is incorrect. How can I correct it?
...
If you are submitting more than 150 entries, please e-mail curator@arabidopsis.org for additional instructions otherwise please submit your data by using the following preformatted spreadsheet:
Download: marker_polymorphism_data_form.xls (CHANGE URL)
Instructions on how to use the preformatted spreadsheet:
...
Option 1) Use a preformatted Excel spreadsheet. To submit your data, please download and complete the following Excel spreadsheet. Examples are provided for each column.
Download: phenotype_data_form.xls (CHANGE LINK)
Option 2) Send tab-delimited data from any program. If you want to create your own file please follow the following format in submitting your data and send the files to: curator@arabidopsis.org. Please include the column headers as the first line in your files.
...
