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Re= source Link | ATHENA |
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De= scription | ATHENA is = a data exploration tool that provides access to a collection of > 18,000= protein and > 25,000 transcript expression profiles across a set of 30 = matching tissues from Arabidopsis thaliana (Col-0). Data represent intensit= y-based absolute quantifications (iBAQ) for the proteome and transcripts pe= r kilobase million (TPM) for the transcriptome. |
Ma= intained by | Technical University of Munich= a> |
Re= source Link | Biological General Repository for Interaction = Datasets (BioGRID) |
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De= scription | Data repository for curated protein and genetic = interactions. |
Ma= intained by | Tyers Lab |
Re= source Link | Functional Analysis Tools for Post-Translational Modifications= a> |
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De= scription | Database of post translational modifications (PT= MS) for Arabidopsis proteins including quantitative phosphorylation data, u= biquitylation, glycosylation,acetylation and others.Search by proteins, mod= ification and co PTM networks. |
Ma= intained by | Ian Wall= ace, University of Nevada<= /td> |
Re= source Link | IntAct |
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De= scription | IntAct provides a freely available, open source database system= and analysis tools for molecular interaction data. All interactions are de= rived from literature curation or direct user submissions and are freely av= ailable. |
Ma= intained by | EMBL-EBI |
Re= source Link | Plant Protein Phosphorylation DataBase= (P3DB) |
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De= scription | The Plant Pro= tein Phosphorylation DataBase (P3DB) contains several published proteomics = datasets listing sites of protein phosphorylation and acetylation for Arabi= dopsis and other plant species. |
Ma= intained by | Jay Thelen and Dong Xu |
Re= source Link | Pride/ProteomeXchange |
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De= scription | The PRIDE = PRoteomics IDEntifications (PRIDE) database is a centralized, standards com= pliant, public data repository for proteomics data, including protein and p= eptide identifications, post-translational modifications and supporting spe= ctral evidence. |
Ma= intained by | EBI-EMBL |
Re= source Link | Protein Modification = Viewer |
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De= scription | Protein modification database, data reposi= tory and analysis tools. |
Ma= intained by | VIB |
Re= source Link | Proteomics DB |
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De= scription | Database and repository for quantitative ma= ss spectrometry-based proteomics data and protein turnover data. Now includ= es data for Arabidopsis. |
Ma= intained by | Prof. Dr. Bernhard K=C3=BCster |
Re= source Link | Research Collaboratory for Structural Bioinforma= tics-Protein Data Bank (PDB) |
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De= scription | Database of protein and DNA 3-dimensional struct= ures.Search, visualization and analysis tools for structural biology. |
Ma= intained by | Rutgers and UCSD/SDSC |
Re= source Link | Seed Proteome= Database |
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De= scription | Datasets for seed dormancy and germination prote= omes. |
Ma= intained by | Institut Jean Pie= rre Bourgin |
Re= source Link | SUBA4 |
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De= scription | SUBA is the central resource for Arabidops= is protein subcellular location data and provides a subcellular data query = platform, protein sequence BLAST alignment, a high confidence subcellular l= ocations reference standards and analytic tools. |
Ma= intained by | Harvey Millar |
Re= source Link | The Arabidopsis Protein Phosph= orylation Site Database (PhosPhAt) |
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De= scription | The Arabidopsis Protein Phosphorylation Si= te Database contains large scale proteomic based data from both published a= nd unpublished sources. Data is provided as either a searchable list of ide= ntified peptides or ions with annotated phosphorylation site (where availab= le) or as a protein summary page with AGI. |
Ma= intained by | University= of Hohenheim |