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December 4November 15, 20202022. We are pleased to announce the PhyloGenes version 2.2 release.  4.1 release. This release updates only the GO annotation data and the publications counts for the gene family members. The gene families and gene trees are the same as for the PhyloGenes 4.0 release and are still from the  PANTHER 1517.0 release.  In In PhyloGenes only  genes from genes from plant genomes and selected non-plant model organisms  were included. Genes from other genomes in the PANTHER build have been removed (pruned).  More stats

Updated GO annotations: Experimental gene function data was annotations were extracted from the Gene Ontology Consortium (files created on 2020-04-28by PANTHER on 2022-10-27, based on the 2022-07-01 GO release). Phylogenetic inferred gene function data was annotations were extracted from the  GO PAINT project  (files created generated on 20202022-05-21).

What’s new:

  • You can download the multiple sequence alignment of a gene family. This feature is accessed from the Operations menu icon above a gene tree.
  • Click on a gene, a leaf node on a gene tree, you will be able to download a list of its plant orthologs.   

What we are working on:

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09-26, based on the 2022-07-01 GO release which uses PANTHER 15 tree information, downloaded by the PhyloGenes team on 2022-10-20).



Please take a few minutes to share with us your experience of using the PhyloGenes resource. 

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