We are pleased to announce the PhyloGenes version 1.2 release (released on November 8, 2019). The gene family build has not changed in this release. The gene families and gene trees are pruned versions of PANTHER 14.1 release. They contain only genes from selected plant genomes and 10 non-plant model organisms. Genes from other genomes in the PANTHER build have been removed (pruned). More stats
What's new
- Experimental gene function data have been updated. They were extracted using the QuickGO REST API (https://www.ebi.ac.uk/QuickGO/api/index.html) on 2019-10-25.
- Toggle to see multiple sequence alignment (MSA) of a gene family (more)
- Graft your sequence to an existing PhyloGenes gene family tree (for species not included in PhyloGenes) (more)
We enhanced the alignment between trees and their adjacent gene information tables. Leaf nodes in a tree now stay aligned with their corresponding gene rows in the gene table when resizing to a narrow browser window. We also fixed a rare data bug where some members were missing from the DUF641 gene family tree. If you notice anything else wrong please let us know!
In the pipeline
- 10 more plant genomes will be added to PhyloGenes gene families, including potato, cassava, oilseed rape, Eucalyptus grandis, Selaginella moellendorffii, among others
- Safari and Firefox browsers will be supported
