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March 4, 2020. We are pleased to announce the PhyloGenes version 1.2 release (released on November 8, 2019). The gene family build has not changed 2.0. A total of 8512 gene families are included in this release. The gene families and gene trees are pruned versions of of PANTHER 1415.1 0 release. They They contain only genes from selected from plant genomes and 10 selected non-plant model organisms. Genes from other genomes in the PANTHER build have been removed (pruned). More stats
What's new
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Experimental gene function data
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We enhanced the alignment between trees and their adjacent gene information tables. Leaf nodes in a tree now stay aligned with their corresponding gene rows in the gene table when resizing to a narrow browser window. We also fixed a rare data bug where some members were missing from the DUF641 gene family tree. If you notice anything else wrong please let us know!
In the pipeline
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are extracted from the files available from the Gene Ontology Annotations (GOA) project at the EBI (file generated on 2020-02-07). More stats
What’s new:
- 10 more plant genomes were added to gene families including potato, cassava, oilseed rape (see complete species list here)
- You can select an organism to have its genes highlighted in a tree
- Easier tree browsing using mouse wheel or trackpad for scrolling
- Better alignment between a tree and its gene information table
- Compact UI showing more data on a family page
- Safari and Firefox browsers are now supported
In the pipeline:
- Display gene function annotations to GO Biological Process terms that are supported by experimental evidence
- Display inferred gene functions through biological ancestor
- Download Multiple Sequence Alignment of gene families
- Download protein sequences of family members
