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PhyloGenes 2.1

August 14, 2020. We are pleased to announce the PhyloGenes version 2.1 release.  The gene families and gene trees are from the  PANTHER 15.0 release. In PhyloGenes only  genes from plant genomes and selected non-plant model organisms were included. Genes from other genomes in the PANTHER build have been removed (pruned). More stats

Experimental gene function data was extracted from the Gene Ontology Consortium (files created on 2020-04-28). Phylogenetic inferred gene function data was extracted from the PAINT project (files created on 2020-05-21).

What’s new:

  • We added experimentally validated gene function annotations from GO Biological Process
  • We added phylogenetic inferred gene functions (GO Biological Process and Molecular Function)
  • Added feature to customize Gene information display to show/hide selected data and reorder columns. More details  

PhyloGenes 2.0

March 4, 2020. We are pleased to announce the PhyloGenes version 2.0.  A total of 8512 gene families are included in this release. The gene families and gene trees are pruned versions of PANTHER 15.0 release. They contain only genes from plant genomes and selected non-plant model organisms. Genes from other genomes in the PANTHER build have been removed (pruned). Experimental gene function data are extracted from the files available from the Gene Ontology Annotations (GOA) project at the EBI (file generated on 2020-02-07). More stats

What’s new:

  • 10 more plant genomes were added to gene families including potato, cassava, oilseed rape (see complete species list here)
  • You can select an organism to have its genes highlighted in a tree
  • Easier tree browsing using mouse wheel or trackpad for scrolling
  • Better alignment between a tree and its gene information table
  • Compact UI showing more data on a family page
  • Safari and Firefox browsers are now supported

PhyloGenes 1.2

We are pleased to announce the PhyloGenes version 1.2 release (released on November 8, 2019).  The gene family build has not changed in this release. The gene families and gene trees are pruned versions of PANTHER 14.1 release. They contain only genes from selected plant genomes and 10 non-plant model organisms. Genes from other genomes in the PANTHER build have been removed (pruned). More stats

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