Page History
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August 14, 2020. We are pleased to announce the PhyloGenes version 2.
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1 release.
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The gene families and gene trees are
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from the PANTHER 15.0 release.
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In PhyloGenes only
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genes from plant genomes and selected non-plant model organisms were included. Genes from other genomes in the PANTHER build have been removed (pruned).
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Experimental gene function data
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was extracted from the
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Gene Ontology
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What’s new:
- 10 more plant genomes were added to gene families including potato, cassava, oilseed rape (see complete species list here)
- You can select an organism to have its genes highlighted in a tree
- Easier tree browsing using mouse wheel or trackpad for scrolling
- Better alignment between a tree and its gene information table
- Compact UI showing more data on a family page
- Safari and Firefox browsers are now supported
In the pipeline:
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Consortium (files created on 2020-04-28). Phylogenetic inferred gene function data was extracted from the PAINT project (files created on 2020-05-21).
What’s new:
- We added experimentally validated gene function annotations from GO Biological Process
- We added phylogenetic inferred gene functions (GO Biological Process and Molecular Function)
- Added feature to customize Gene information display to show/hide selected data and reorder columns. More details
What we are working on:
- Linking publications to genes in tree
- Download protein sequences of family members
Please take a few minutes to share with us your experience of using the PhyloGenes resource.
