PhyloGenes is a web resource that displays pre-computed phylogenetic trees of gene families alongside experimental gene function data to facilitate inference of unknown gene function in plants.
PhyloGenes is managed by the nonprofit Phoenix Bioinformatics Corporation. It is co-developed by Phoenix Bioinformatics and the PANTHER project at University of Southern California, and is supported by funding provided by the National Science Foundation (Grant No. DBI-1661543).
Citing PhyloGenes:
Zhang P, Berardini TZ, Ebert D, Li Q, Mi H, Muruganujan A, Prithvi T, Reiser L, Sawant S, Thomas PD, Huala E
Plant Direct. 2020 Dec;4(12):e00293
Current release (version 3.0)
February 11, 2021. We are pleased to announce the PhyloGenes version 3.0 release. In this release the gene families and gene trees were updated from the PANTHER 15.0 release to PANTHER 16.0 release. In PhyloGenes only genes from plant genomes and selected non-plant model organisms were included. Genes from other genomes in the PANTHER build have been removed (pruned). More stats
Experimental gene function data was extracted from the Gene Ontology Consortium (files created on 2020-12-07). Phylogenetic inferred gene function data was extracted from the GO PAINT project (files created on 2021-01-04).
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