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DateUpdate
UPCOMING: August 6, 2023

Plant Biology 2023 in Savannah, GA: Plant Bioinformatics Resources for FAIR Agricultural Data Discovery and Reuse workshop (10:30 am - 12:30 pm)

Update on the reannotation effort included in the TAIR presentation

July 24, 2023
  1. over 300 genes have been started, about 70 are done
  2. 4 office hours held (Wednesdays by Slack)
  3. discussions going on in Slack
    1. what to do with insertion of mt sequence in chr2 - annotate genes or not?
    2. should we have a scoring system for genes?
    3. new track suggestions
      1. PFAM domains  - community suggested, created, and loaded
      2. PANTHER families - community suggested, created, and loaded
    4. track metadata table available in Apollo Tips
July 7, 2023Gene list assignments (over 2000 genes) distributed (email and Slack)
June 29, 2023Apollo editing training session 3: 14 participants
June 28, 2023Apollo basics training session 3: 10 participants
June 8, 2023Arabidopsis Bioinformatics workshop at ICAR2023 in Chiba: Update on reannotation effort.
June 1, 2023Apollo editing training session 2: 18 participants.
May 31, 2023Apollo editing training session 1: 28 participants.
May 26, 2023Apollo basics training session 2: 25 participants from 6 countries. Now 10 countries total!
May 23, 2023Apollo basics training session 1: 35 participants from 8 countries.
May 12, 2023Apollo training dates set: May 23 (T) and May 25 (F), 7 - 8:30 am US Pacific time (UTC -7)
Apr. 27, 2023Call for community volunteers for manual review phase goes out.
Apr. 17, 2023Initial assessment of automated annotation pipeline results begins.
Apr. 11, 2023NCBI Eukaryotic Annotation automated pipeline complete.
Feb. 23, 2023NCBI Eukaryotic Annotation team begins process of running the automated annotation pipeline with several datasets suggested by the community included
Jan. 26, 2023TAIR puts out community call via social media for additional expression datasets that could be included in annotation run
Jan. 25, 2023NCBI completes review of assembly and releases to public: https://www.ncbi.nlm.nih.gov/assembly/GCA_028009825.1
Jan. 16. 2023Arabidopsis Informatics Workshop at PAG30 in San Diego: Two talks given that contained information relevant to the v12 project.
Dec. 23, 2022Schneeberger lab submits Col-CC (community consensus) assembly to NCBI
Oct. 27, 2022First community meeting
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