- What is a gene family in PhyloGenes?
- How is the boundary of a gene family defined?
- What is the procedure you used in building a gene family and constructing its gene tree?
- How are PANTHER gene trees constructed?
- How is branch length calculated?
- Why aren’t there any bootstrap or other support values for the tree topology?
- What is a subfamily?
- How are gene families named? Why are some families not named?
- How are subfamilies named. Why are some subfamilies not named?
- What is horizontal gene transfer? How is it detected in PANTHER gene trees?
- Are polyploid organisms represented in gene families?
- How does tree pruning work? Does pruning change the tree topology?
My gene is not found in PhyloGenes. Why?
